cBioPortal Documentation
Welcome to the documentation for cBioPortal! Below you can find an index of all available documentation to help you to deploy and maintain a local instance of cBioPortal, as well as information on how to upload data. Specific pages are also available for developers. For details on contributing code changes and pull-requests to cBioPortal, please see our CONTRIBUTING Doc.
We also maintain an active list of RFCs (Requests for Comments) where we describe new features and solicit community feedback.
1. General
2. cBioPortal Deployment
2.1 Deployment
2.1.1 Deploy with Docker (Recommended)
2.1.2 Deploy without Docker
- Software Requirements
- Pre-Build Steps
- Building from Source
- Importing the Seed Database
- Deploying the Web Application
- Loading a Sample Study
2.2 Authorization and Authentication
- User Authorization
- Authenticating Users via SAML
- Authenticating Users via LDAP
- Authenticating and Authorizing Users via Keycloak
- Authenticating Users via Tokens
2.3 Customization
3. cBioPortal Maintenance
4. Development
- cBioPortal Entity-relationship Diagram
- Using the Data Manager to Get Data and Set Session Parameters
- Accessing Services via the Web-API
- Providing cBioPortal Parameters
- Manual test cases
- Build cBioPortal with a different frontend version
- Release-Procedure
- Deployment-Procedure